#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02012/HG02012.cram --algo AlignmentStat 1000G/HG02012/QCmetrics/HG02012.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446028244	446028244	1.000000	0	445925068	0.999769	66259753289	421195146	62817392676	61849215592	0.000000	0.003806	0.003249	0.000254	150.000000	445053196	0.998045	0	0.500509	0.007603	0.000000	
SECOND_OF_PAIR	446028244	446028244	1.000000	0	445112978	0.997948	65727372465	417904020	62132737186	60896543314	0.000000	0.004555	0.003920	0.000259	150.000000	445053196	0.999866	0	0.500852	0.008024	0.000000	
PAIR	892056488	892056488	1.000000	0	891038046	0.998858	131987125754	839099166	124950129862	122745758906	0.000000	0.004179	0.003583	0.000256	150.000000	890106392	0.998954	0	0.500681	0.007813	0.000000