#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02014/HG02014.cram --algo AlignmentStat 1000G/HG02014/QCmetrics/HG02014.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	354648985	354648985	1.000000	0	354587225	0.999826	52721766677	332554980	49631771800	49035550491	0.000000	0.003645	0.002987	0.000266	150.000000	353638228	0.997324	0	0.500515	0.007771	0.000000	
SECOND_OF_PAIR	354648985	354648985	1.000000	0	353675065	0.997254	52303501331	329356984	49074940884	48240655309	0.000000	0.004342	0.003599	0.000272	150.000000	353638228	0.999896	0	0.500816	0.008061	0.000000	
PAIR	709297970	709297970	1.000000	0	708262290	0.998540	105025268008	661911964	98706712684	97276205800	0.000000	0.003992	0.003291	0.000269	150.000000	707276456	0.998608	0	0.500665	0.007916	0.000000