#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02031/HG02031.cram --algo AlignmentStat 1000G/HG02031/QCmetrics/HG02031.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356824676	356824676	1.000000	0	356754066	0.999802	53056588481	337246122	50339500185	49700487229	0.000000	0.003481	0.002939	0.000228	150.000000	355872830	0.997530	0	0.500592	0.006220	0.000000	
SECOND_OF_PAIR	356824676	356824676	1.000000	0	355911505	0.997441	52655311519	333975383	49776592884	48932631308	0.000000	0.004096	0.003445	0.000234	150.000000	355872830	0.999891	0	0.501260	0.006425	0.000000	
PAIR	713649352	713649352	1.000000	0	712665571	0.998621	105711900000	671221505	100116093069	98633118537	0.000000	0.003787	0.003191	0.000231	150.000000	711745660	0.998709	0	0.500926	0.006322	0.000000