#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02035/HG02035.cram --algo AlignmentStat 1000G/HG02035/QCmetrics/HG02035.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387898434	387898434	1.000000	0	387816344	0.999788	57683400888	364480283	54406787847	53727334170	0.000000	0.003590	0.002967	0.000230	150.000000	386912359	0.997669	0	0.500523	0.006390	0.000000	
SECOND_OF_PAIR	387898434	387898434	1.000000	0	386954975	0.997568	57263229608	361193719	53829946473	52882481178	0.000000	0.004269	0.003542	0.000234	150.000000	386912359	0.999890	0	0.501064	0.006579	0.000000	
PAIR	775796868	775796868	1.000000	0	774771319	0.998678	114946630496	725674002	108236734320	106609815348	0.000000	0.003928	0.003253	0.000232	150.000000	773824718	0.998778	0	0.500793	0.006484	0.000000