#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02076/HG02076.cram --algo AlignmentStat 1000G/HG02076/QCmetrics/HG02076.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380045290	380045290	1.000000	0	379975717	0.999817	56505114065	356139162	53158831913	52501759394	0.000000	0.003629	0.002983	0.000232	150.000000	379253328	0.998099	0	0.500541	0.005979	0.000000	
SECOND_OF_PAIR	380045290	380045290	1.000000	0	379293267	0.998021	56169647428	353595452	52711580982	51891997318	0.000000	0.004072	0.003348	0.000235	150.000000	379253328	0.999895	0	0.500517	0.006122	0.000000	
PAIR	760090580	760090580	1.000000	0	759268984	0.998919	112674761493	709734614	105870412895	104393756712	0.000000	0.003850	0.003165	0.000234	150.000000	758506656	0.998996	0	0.500529	0.006050	0.000000