#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02085/HG02085.cram --algo AlignmentStat 1000G/HG02085/QCmetrics/HG02085.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	349313753	349313753	1.000000	0	349251864	0.999823	51908384539	327471594	48868030701	48281939272	0.000000	0.003636	0.002898	0.000247	150.000000	348306155	0.997292	0	0.500412	0.006735	0.000000	
SECOND_OF_PAIR	349313753	349313753	1.000000	0	348342906	0.997221	51493190650	324183896	48307259351	47499256800	0.000000	0.004263	0.003438	0.000253	150.000000	348306155	0.999894	0	0.500903	0.006875	0.000000	
PAIR	698627506	698627506	1.000000	0	697594770	0.998522	103401575189	651655490	97175290052	95781196072	0.000000	0.003948	0.003166	0.000250	150.000000	696612310	0.998592	0	0.500657	0.006805	0.000000