#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02104/HG02104.cram --algo AlignmentStat 1000G/HG02104/QCmetrics/HG02104.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395230156	395230156	1.000000	0	395141076	0.999775	58785951720	373058289	55697721648	55003329341	0.000000	0.003524	0.002899	0.000225	150.000000	394160452	0.997518	0	0.500480	0.006010	0.000000	
SECOND_OF_PAIR	395230156	395230156	1.000000	0	394204479	0.997405	58320563838	369176534	55036232158	54140801009	0.000000	0.004061	0.003324	0.000231	150.000000	394160452	0.999888	0	0.501314	0.006216	0.000000	
PAIR	790460312	790460312	1.000000	0	789345555	0.998590	117106515558	742234823	110733953806	109144130350	0.000000	0.003792	0.003111	0.000228	150.000000	788320904	0.998702	0	0.500897	0.006113	0.000000