#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02108/HG02108.cram --algo AlignmentStat 1000G/HG02108/QCmetrics/HG02108.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375171227	375171227	1.000000	0	375091497	0.999787	55759696441	354011383	52836947439	52187605937	0.000000	0.003697	0.003070	0.000253	150.000000	374269811	0.997809	0	0.500451	0.006110	0.000000	
SECOND_OF_PAIR	375171227	375171227	1.000000	0	374313272	0.997713	55370105992	350826736	52291047310	51487234530	0.000000	0.004132	0.003410	0.000257	150.000000	374269811	0.999884	0	0.501111	0.006283	0.000000	
PAIR	750342454	750342454	1.000000	0	749404769	0.998750	111129802433	704838119	105127994749	103674840467	0.000000	0.003914	0.003239	0.000255	150.000000	748539622	0.998846	0	0.500780	0.006196	0.000000