#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02127/HG02127.cram --algo AlignmentStat 1000G/HG02127/QCmetrics/HG02127.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376196070	376196070	1.000000	0	376127298	0.999817	55979042655	356504397	53227881528	52566730386	0.000000	0.003396	0.002902	0.000224	150.000000	375317086	0.997846	0	0.500590	0.005673	0.000000	
SECOND_OF_PAIR	376196070	376196070	1.000000	0	375355625	0.997766	55609985679	353580622	52718579407	51861963180	0.000000	0.003955	0.003374	0.000227	150.000000	375317086	0.999897	0	0.500878	0.005819	0.000000	
PAIR	752392140	752392140	1.000000	0	751482923	0.998792	111589028334	710085019	105946460935	104428693566	0.000000	0.003675	0.003137	0.000225	150.000000	750634172	0.998871	0	0.500734	0.005746	0.000000