#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02128/HG02128.cram --algo AlignmentStat 1000G/HG02128/QCmetrics/HG02128.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371355334	371355334	1.000000	0	371211629	0.999613	55123767656	348059421	51886535647	51115485828	0.000000	0.003934	0.003243	0.000235	150.000000	370416012	0.997857	0	0.500480	0.007465	0.000000	
SECOND_OF_PAIR	371355334	371355334	1.000000	0	370485131	0.997657	54812596527	345195472	51433954687	50554100473	0.000000	0.004250	0.003466	0.000242	150.000000	370416012	0.999813	0	0.500908	0.007678	0.000000	
PAIR	742710668	742710668	1.000000	0	741696760	0.998635	109936364183	693254893	103320490334	101669586301	0.000000	0.004092	0.003354	0.000238	150.000000	740832024	0.998834	0	0.500694	0.007571	0.000000