#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02130/HG02130.cram --algo AlignmentStat 1000G/HG02130/QCmetrics/HG02130.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374011937	374011937	1.000000	0	373940035	0.999808	55650609027	354694155	52957089955	52281747049	0.000000	0.003387	0.002900	0.000221	150.000000	373070626	0.997675	0	0.500559	0.005375	0.000000	
SECOND_OF_PAIR	374011937	374011937	1.000000	0	373110429	0.997590	55239278017	351227943	52361138104	51500222753	0.000000	0.003934	0.003338	0.000225	150.000000	373070626	0.999893	0	0.501175	0.005525	0.000000	
PAIR	748023874	748023874	1.000000	0	747050464	0.998699	110889887044	705922098	105318228059	103781969802	0.000000	0.003660	0.003118	0.000223	150.000000	746141252	0.998783	0	0.500867	0.005450	0.000000