#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02133/HG02133.cram --algo AlignmentStat 1000G/HG02133/QCmetrics/HG02133.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380430934	380430934	1.000000	0	380349695	0.999786	56544579626	361180357	53877118892	53035727674	0.000000	0.003628	0.003123	0.000228	150.000000	379396479	0.997494	0	0.500483	0.006062	0.000000	
SECOND_OF_PAIR	380430934	380430934	1.000000	0	379445907	0.997411	56004952771	357443846	53153476568	52065750643	0.000000	0.004470	0.003868	0.000235	150.000000	379396479	0.999870	0	0.501335	0.006342	0.000000	
PAIR	760861868	760861868	1.000000	0	759795602	0.998599	112549532397	718624203	107030595460	105101478317	0.000000	0.004047	0.003493	0.000232	150.000000	758792958	0.998680	0	0.500908	0.006202	0.000000