#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02134/HG02134.cram --algo AlignmentStat 1000G/HG02134/QCmetrics/HG02134.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372165644	372165644	1.000000	0	372074063	0.999754	55336386759	350475691	52310909501	51657737423	0.000000	0.003576	0.002953	0.000226	150.000000	371233535	0.997741	0	0.500491	0.006710	0.000000	
SECOND_OF_PAIR	372165644	372165644	1.000000	0	371277614	0.997614	54932308822	347260814	51754600388	50936050458	0.000000	0.004048	0.003326	0.000230	150.000000	371233535	0.999881	0	0.500860	0.006914	0.000000	
PAIR	744331288	744331288	1.000000	0	743351677	0.998684	110268695581	697736505	104065509889	102593787881	0.000000	0.003811	0.003138	0.000228	150.000000	742467070	0.998810	0	0.500676	0.006812	0.000000