#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02136/HG02136.cram --algo AlignmentStat 1000G/HG02136/QCmetrics/HG02136.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369701180	369701180	1.000000	0	369620280	0.999781	54950086736	349799286	52170904923	51393907938	0.000000	0.003673	0.003169	0.000227	150.000000	368867550	0.997964	0	0.500565	0.006155	0.000000	
SECOND_OF_PAIR	369701180	369701180	1.000000	0	368923976	0.997898	54653452204	347011124	51729712557	50874601475	0.000000	0.003932	0.003337	0.000232	150.000000	368867550	0.999847	0	0.500991	0.006286	0.000000	
PAIR	739402360	739402360	1.000000	0	738544256	0.998839	109603538940	696810410	103900617480	102268509413	0.000000	0.003802	0.003253	0.000230	150.000000	737735100	0.998904	0	0.500777	0.006220	0.000000