#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02142/HG02142.cram --algo AlignmentStat 1000G/HG02142/QCmetrics/HG02142.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386529837	386529837	1.000000	0	386448360	0.999789	57514936412	365197612	54526389513	53855076074	0.000000	0.003404	0.002897	0.000225	150.000000	385525388	0.997612	0	0.500694	0.006023	0.000000	
SECOND_OF_PAIR	386529837	386529837	1.000000	0	385567477	0.997510	57078668202	361613006	53911642262	53028690109	0.000000	0.003986	0.003373	0.000231	150.000000	385525388	0.999891	0	0.501053	0.006193	0.000000	
PAIR	773059674	773059674	1.000000	0	772015837	0.998650	114593604614	726810618	108438031775	106883766183	0.000000	0.003694	0.003134	0.000228	150.000000	771050776	0.998750	0	0.500873	0.006108	0.000000