#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02146/HG02146.cram --algo AlignmentStat 1000G/HG02146/QCmetrics/HG02146.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341090081	341090081	1.000000	0	341004712	0.999750	50661322546	322399020	48061727972	47213090302	0.000000	0.004018	0.003486	0.000222	150.000000	340101567	0.997352	0	0.500424	0.006048	0.000000	
SECOND_OF_PAIR	341090081	341090081	1.000000	0	340159296	0.997271	50374847912	319425691	47623089992	46760257677	0.000000	0.004288	0.003665	0.000230	150.000000	340101567	0.999830	0	0.501423	0.006128	0.000000	
PAIR	682180162	682180162	1.000000	0	681164008	0.998510	101036170458	641824711	95684817964	93973347979	0.000000	0.004153	0.003575	0.000226	150.000000	680203134	0.998589	0	0.500923	0.006088	0.000000