#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02165/HG02165.cram --algo AlignmentStat 1000G/HG02165/QCmetrics/HG02165.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376228482	376228482	1.000000	0	376146298	0.999782	55965734483	355599718	53087910618	52427567045	0.000000	0.003438	0.002907	0.000223	150.000000	375207009	0.997503	0	0.500526	0.005981	0.000000	
SECOND_OF_PAIR	376228482	376228482	1.000000	0	375248491	0.997395	55548031030	352293951	52511973569	51575506050	0.000000	0.004183	0.003547	0.000228	150.000000	375207009	0.999889	0	0.501223	0.006144	0.000000	
PAIR	752456964	752456964	1.000000	0	751394789	0.998588	111513765513	707893669	105599884187	104003073095	0.000000	0.003809	0.003225	0.000226	150.000000	750414018	0.998695	0	0.500874	0.006062	0.000000