#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02181/HG02181.cram --algo AlignmentStat 1000G/HG02181/QCmetrics/HG02181.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370283008	370283008	1.000000	0	370210410	0.999804	55077872907	350186254	52275615543	51625465021	0.000000	0.003393	0.002875	0.000223	150.000000	369338890	0.997646	0	0.500654	0.006112	0.000000	
SECOND_OF_PAIR	370283008	370283008	1.000000	0	369380016	0.997561	54668219016	346749395	51691802056	50865143882	0.000000	0.003895	0.003266	0.000229	150.000000	369338890	0.999889	0	0.501152	0.006315	0.000000	
PAIR	740566016	740566016	1.000000	0	739590426	0.998683	109746091923	696935649	103967417599	102490608903	0.000000	0.003643	0.003069	0.000226	150.000000	738677780	0.998766	0	0.500902	0.006213	0.000000