#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02186/HG02186.cram --algo AlignmentStat 1000G/HG02186/QCmetrics/HG02186.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374870097	374870097	1.000000	0	374795858	0.999802	55777048439	355950355	53139863390	52482398382	0.000000	0.003376	0.002898	0.000223	150.000000	374019503	0.997929	0	0.500536	0.006243	0.000000	
SECOND_OF_PAIR	374870097	374870097	1.000000	0	374060575	0.997841	55399232545	352938818	52620052643	51836566566	0.000000	0.003735	0.003171	0.000227	150.000000	374019503	0.999890	0	0.500713	0.006454	0.000000	
PAIR	749740194	749740194	1.000000	0	748856433	0.998821	111176280984	708889173	105759916033	104318964948	0.000000	0.003555	0.003034	0.000225	150.000000	748039006	0.998908	0	0.500624	0.006348	0.000000