#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02190/HG02190.cram --algo AlignmentStat 1000G/HG02190/QCmetrics/HG02190.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379566330	379566330	1.000000	0	379475129	0.999760	56458954320	358621481	53539598777	52902536405	0.000000	0.003400	0.002870	0.000224	150.000000	378609944	0.997720	0	0.500647	0.005545	0.000000	
SECOND_OF_PAIR	379566330	379566330	1.000000	0	378652168	0.997592	56065736838	355600244	53001760347	52067077804	0.000000	0.004164	0.003534	0.000228	150.000000	378609944	0.999888	0	0.501013	0.005691	0.000000	
PAIR	759132660	759132660	1.000000	0	758127297	0.998676	112524691158	714221725	106541359124	104969614209	0.000000	0.003781	0.003200	0.000226	150.000000	757219888	0.998803	0	0.500830	0.005618	0.000000