#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02215/HG02215.cram --algo AlignmentStat 1000G/HG02215/QCmetrics/HG02215.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383762463	383762463	1.000000	0	383686536	0.999802	57010785208	361919912	53984891380	53118863738	0.000000	0.003833	0.003248	0.000232	150.000000	382929336	0.998027	0	0.500664	0.007407	0.000000	
SECOND_OF_PAIR	383762463	383762463	1.000000	0	382972883	0.997943	56711691990	359649494	53590294747	52538338176	0.000000	0.004410	0.003756	0.000234	150.000000	382929336	0.999886	0	0.500545	0.007624	0.000000	
PAIR	767524926	767524926	1.000000	0	766659419	0.998872	113722477198	721569406	107575186127	105657201914	0.000000	0.004121	0.003501	0.000233	150.000000	765858672	0.998956	0	0.500605	0.007516	0.000000