#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02219/HG02219.cram --algo AlignmentStat 1000G/HG02219/QCmetrics/HG02219.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398552136	398552136	1.000000	0	398468278	0.999790	59239587976	376193778	56120442915	55272947945	0.000000	0.003631	0.003054	0.000223	150.000000	397498523	0.997566	0	0.500485	0.006260	0.000001	
SECOND_OF_PAIR	398552136	398552136	1.000000	0	397550008	0.997486	58705381876	372832606	55435344809	54229694342	0.000000	0.004653	0.003990	0.000229	150.000000	397498523	0.999870	0	0.501069	0.006587	0.000000	
PAIR	797104272	797104272	1.000000	0	796018286	0.998638	117944969852	749026384	111555787724	109502642287	0.000000	0.004139	0.003519	0.000226	150.000000	794997046	0.998717	0	0.500777	0.006423	0.000001