#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02238/HG02238.cram --algo AlignmentStat 1000G/HG02238/QCmetrics/HG02238.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371425721	371425721	1.000000	0	371339904	0.999769	55235709243	349986611	52244246283	51601537610	0.000000	0.003524	0.002917	0.000223	150.000000	370475210	0.997671	0	0.500501	0.006291	0.000000	
SECOND_OF_PAIR	371425721	371425721	1.000000	0	370519009	0.997559	54832727106	346740626	51685029836	50831988634	0.000000	0.004097	0.003388	0.000228	150.000000	370475210	0.999882	0	0.501042	0.006471	0.000000	
PAIR	742851442	742851442	1.000000	0	741858913	0.998664	110068436349	696727237	103929276119	102433526244	0.000000	0.003810	0.003151	0.000225	150.000000	740950420	0.998775	0	0.500771	0.006381	0.000000