#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02259/HG02259.cram --algo AlignmentStat 1000G/HG02259/QCmetrics/HG02259.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375865868	375865868	1.000000	0	375751661	0.999696	55795228745	352548966	52568737705	51637168701	0.000000	0.004330	0.003658	0.000227	150.000000	374838924	0.997571	0	0.500513	0.007073	0.000000	
SECOND_OF_PAIR	375865868	375865868	1.000000	0	374899454	0.997429	55399739359	349325616	52025864577	51042348506	0.000000	0.004589	0.003813	0.000233	150.000000	374838924	0.999839	0	0.500936	0.007320	0.000000	
PAIR	751731736	751731736	1.000000	0	750651115	0.998562	111194968104	701874582	104594602282	102679517207	0.000000	0.004459	0.003735	0.000230	150.000000	749677848	0.998703	0	0.500725	0.007197	0.000000