#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02277/HG02277.cram --algo AlignmentStat 1000G/HG02277/QCmetrics/HG02277.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370223539	370223539	1.000000	0	370146107	0.999791	55031110831	348246569	51977787092	51341223166	0.000000	0.003612	0.002936	0.000233	150.000000	369180185	0.997390	0	0.500480	0.006696	0.000000	
SECOND_OF_PAIR	370223539	370223539	1.000000	0	369221506	0.997293	54584130172	344595749	51355265235	50519186646	0.000000	0.004178	0.003395	0.000239	150.000000	369180185	0.999888	0	0.501287	0.006880	0.000000	
PAIR	740447078	740447078	1.000000	0	739367613	0.998542	109615241003	692842318	103333052327	101860409812	0.000000	0.003894	0.003164	0.000236	150.000000	738360370	0.998638	0	0.500883	0.006788	0.000000