#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02282/HG02282.cram --algo AlignmentStat 1000G/HG02282/QCmetrics/HG02282.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	381635809	381635809	1.000000	0	381496339	0.999635	56634209196	361127502	53806718319	52709156113	0.000000	0.004692	0.004140	0.000246	150.000000	380453333	0.997266	0	0.500438	0.006134	0.000000	
SECOND_OF_PAIR	381635809	381635809	1.000000	0	380533903	0.997113	56330926238	357984656	53350234543	52238094730	0.000000	0.004847	0.004210	0.000253	150.000000	380453333	0.999788	0	0.501241	0.006160	0.000000	
PAIR	763271618	763271618	1.000000	0	762030242	0.998374	112965135434	719112158	107156952862	104947250843	0.000000	0.004769	0.004175	0.000250	150.000000	760906666	0.998526	0	0.500839	0.006147	0.000000