#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02285/HG02285.cram --algo AlignmentStat 1000G/HG02285/QCmetrics/HG02285.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362618486	362618486	1.000000	0	362481997	0.999624	53895955168	341124902	50913334832	50286838496	0.000000	0.003514	0.002897	0.000229	150.000000	361585588	0.997527	0	0.500437	0.006710	0.000000	
SECOND_OF_PAIR	362618486	362618486	1.000000	0	361634366	0.997286	53485120895	337821445	50342379154	49488308826	0.000000	0.004156	0.003429	0.000234	150.000000	361585588	0.999865	0	0.501332	0.006923	0.000000	
PAIR	725236972	725236972	1.000000	0	724116363	0.998455	107381076063	678946347	101255713986	99775147322	0.000000	0.003834	0.003161	0.000231	150.000000	723171176	0.998695	0	0.500884	0.006816	0.000000