#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02299/HG02299.cram --algo AlignmentStat 1000G/HG02299/QCmetrics/HG02299.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368252698	368252698	1.000000	0	368105318	0.999600	54667654525	345776074	51540924858	50717189169	0.000000	0.004135	0.003483	0.000230	150.000000	367253983	0.997687	0	0.500510	0.006897	0.000000	
SECOND_OF_PAIR	368252698	368252698	1.000000	0	367324070	0.997478	54384552161	342940395	51120113252	50240027517	0.000000	0.004379	0.003641	0.000236	150.000000	367253983	0.999809	0	0.500935	0.007001	0.000000	
PAIR	736505396	736505396	1.000000	0	735429388	0.998539	109052206686	688716469	102661038110	100957216686	0.000000	0.004257	0.003562	0.000233	150.000000	734507966	0.998747	0	0.500722	0.006949	0.000000