#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02419/HG02419.cram --algo AlignmentStat 1000G/HG02419/QCmetrics/HG02419.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	350597910	350597910	1.000000	0	350502912	0.999729	52046919638	330694717	49282058067	48457588391	0.000000	0.004189	0.003625	0.000253	150.000000	349514004	0.997179	0	0.500475	0.006449	0.000000	
SECOND_OF_PAIR	350597910	350597910	1.000000	0	349579002	0.997094	51738113093	327319405	48796465161	47967111645	0.000000	0.004444	0.003771	0.000262	150.000000	349514004	0.999814	0	0.501628	0.006486	0.000000	
PAIR	701195820	701195820	1.000000	0	700081914	0.998411	103785032731	658014122	98078523228	96424700036	0.000000	0.004316	0.003698	0.000258	150.000000	699028008	0.998495	0	0.501050	0.006468	0.000000