#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02439/HG02439.cram --algo AlignmentStat 1000G/HG02439/QCmetrics/HG02439.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379010400	379010400	1.000000	0	378882502	0.999663	56260276663	355237973	52981514613	52170150532	0.000000	0.004191	0.003449	0.000268	150.000000	377877681	0.997348	0	0.500518	0.007066	0.000000	
SECOND_OF_PAIR	379010400	379010400	1.000000	0	377935853	0.997165	55855416353	351669289	52402662592	51451268052	0.000000	0.004679	0.003832	0.000274	150.000000	377877681	0.999846	0	0.501281	0.007226	0.000000	
PAIR	758020800	758020800	1.000000	0	756818355	0.998414	112115693016	706907262	105384177205	103621418584	0.000000	0.004434	0.003640	0.000271	150.000000	755755362	0.998595	0	0.500899	0.007146	0.000000