#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02442/HG02442.cram --algo AlignmentStat 1000G/HG02442/QCmetrics/HG02442.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	361534547	361534547	1.000000	0	361446978	0.999758	53693253077	340457245	50770954705	50047183887	0.000000	0.003907	0.003261	0.000260	150.000000	360624089	0.997723	0	0.500434	0.006462	0.000000	
SECOND_OF_PAIR	361534547	361534547	1.000000	0	360682128	0.997642	53376521960	337501235	50303297936	49445725833	0.000000	0.004307	0.003569	0.000265	150.000000	360624089	0.999839	0	0.501252	0.006568	0.000000	
PAIR	723069094	723069094	1.000000	0	722129106	0.998700	107069775037	677958480	101074252641	99492909720	0.000000	0.004107	0.003414	0.000262	150.000000	721248178	0.998780	0	0.500843	0.006515	0.000000