#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02462/HG02462.cram --algo AlignmentStat 1000G/HG02462/QCmetrics/HG02462.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390823743	390823743	1.000000	0	390728850	0.999757	58075515954	368215429	54934386818	54132531170	0.000000	0.003854	0.003287	0.000257	150.000000	389812067	0.997654	0	0.500614	0.006676	0.000000	
SECOND_OF_PAIR	390823743	390823743	1.000000	0	389863336	0.997543	57698814266	364923270	54395516493	53444027979	0.000000	0.004326	0.003665	0.000263	150.000000	389812067	0.999868	0	0.501060	0.006843	0.000000	
PAIR	781647486	781647486	1.000000	0	780592186	0.998650	115774330220	733138699	109329903311	107576559149	0.000000	0.004089	0.003475	0.000260	150.000000	779624134	0.998760	0	0.500836	0.006760	0.000000