#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02493/HG02493.cram --algo AlignmentStat 1000G/HG02493/QCmetrics/HG02493.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369336692	369336692	1.000000	0	369253114	0.999774	54849075517	346447164	51669408111	50937142664	0.000000	0.003829	0.003124	0.000240	150.000000	368352000	0.997560	0	0.500538	0.006738	0.000000	
SECOND_OF_PAIR	369336692	369336692	1.000000	0	368407088	0.997483	54488496046	343151830	51139205156	50219654699	0.000000	0.004381	0.003572	0.000247	150.000000	368352000	0.999850	0	0.501426	0.006851	0.000000	
PAIR	738673384	738673384	1.000000	0	737660202	0.998628	109337571563	689598994	102808613267	101156797363	0.000000	0.004104	0.003347	0.000243	150.000000	736704000	0.998704	0	0.500981	0.006794	0.000000