#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02521/HG02521.cram --algo AlignmentStat 1000G/HG02521/QCmetrics/HG02521.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379034058	379034058	1.000000	0	378952200	0.999784	56299741674	355109622	52986823575	52250188110	0.000000	0.003758	0.003022	0.000238	150.000000	377919070	0.997274	0	0.500473	0.006378	0.000000	
SECOND_OF_PAIR	379034058	379034058	1.000000	0	377963130	0.997175	55861028664	351913831	52416859352	51397355133	0.000000	0.004582	0.003756	0.000241	150.000000	377919070	0.999883	0	0.500892	0.006495	0.000000	
PAIR	758068116	758068116	1.000000	0	756915330	0.998479	112160770338	707023453	105403682927	103647543243	0.000000	0.004169	0.003387	0.000240	150.000000	755838140	0.998577	0	0.500682	0.006436	0.000000