#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02541/HG02541.cram --algo AlignmentStat 1000G/HG02541/QCmetrics/HG02541.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375796612	375796612	1.000000	0	375704395	0.999755	55745696480	351280608	52353677732	51457589718	0.000000	0.004356	0.003646	0.000260	150.000000	374823438	0.997655	0	0.500631	0.007382	0.000000	
SECOND_OF_PAIR	375796612	375796612	1.000000	0	374879514	0.997560	55423500555	348285263	51891046525	50985712537	0.000000	0.004481	0.003683	0.000266	150.000000	374823438	0.999850	0	0.500870	0.007546	0.000000	
PAIR	751593224	751593224	1.000000	0	750583909	0.998657	111169197035	699565871	104244724257	102443302255	0.000000	0.004419	0.003664	0.000263	150.000000	749646876	0.998752	0	0.500751	0.007464	0.000000