#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02580/HG02580.cram --algo AlignmentStat 1000G/HG02580/QCmetrics/HG02580.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367503709	367503709	1.000000	0	367387312	0.999683	54597441082	346049147	51618471752	50856927790	0.000000	0.003797	0.003211	0.000253	150.000000	366694267	0.998114	0	0.500581	0.006553	0.000000	
SECOND_OF_PAIR	367503709	367503709	1.000000	0	366746358	0.997939	54188134002	343545415	51100934281	50099544003	0.000000	0.004560	0.003903	0.000257	150.000000	366694267	0.999858	0	0.500630	0.006898	0.000000	
PAIR	735007418	735007418	1.000000	0	734133670	0.998811	108785575084	689594562	102719406033	100956471793	0.000000	0.004177	0.003555	0.000255	150.000000	733388534	0.998985	0	0.500605	0.006725	0.000000