#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02585/HG02585.cram --algo AlignmentStat 1000G/HG02585/QCmetrics/HG02585.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	332873762	332873762	1.000000	0	332781246	0.999722	49384153316	311685197	46457764352	45638495769	0.000000	0.004532	0.003800	0.000273	150.000000	331858288	0.997227	0	0.500488	0.007386	0.000000	
SECOND_OF_PAIR	332873762	332873762	1.000000	0	331913794	0.997116	49035819421	308606252	45966045315	45030551987	0.000000	0.004903	0.004076	0.000279	150.000000	331858288	0.999833	0	0.501333	0.007622	0.000000	
PAIR	665747524	665747524	1.000000	0	664695040	0.998419	98419972737	620291449	92423809667	90669047756	0.000000	0.004717	0.003938	0.000276	150.000000	663716576	0.998528	0	0.500910	0.007504	0.000000