#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02586/HG02586.cram --algo AlignmentStat 1000G/HG02586/QCmetrics/HG02586.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369141297	369141297	1.000000	0	369054042	0.999764	54829926883	347942954	51878509577	51103548768	0.000000	0.003929	0.003356	0.000256	150.000000	368080997	0.997363	0	0.500560	0.007457	0.000001	
SECOND_OF_PAIR	369141297	369141297	1.000000	0	368142990	0.997296	54459198238	344614015	51336159738	50317006393	0.000000	0.004632	0.003949	0.000263	150.000000	368080997	0.999832	0	0.501580	0.007660	0.000000	
PAIR	738282594	738282594	1.000000	0	737197032	0.998530	109289125121	692556969	103214669315	101420555161	0.000000	0.004279	0.003651	0.000259	150.000000	736161994	0.998596	0	0.501069	0.007558	0.000001