#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02594/HG02594.cram --algo AlignmentStat 1000G/HG02594/QCmetrics/HG02594.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	354076156	354076156	1.000000	0	353987112	0.999749	52545763508	331836958	49464512206	48755681084	0.000000	0.004082	0.003377	0.000266	150.000000	353232684	0.997869	0	0.500453	0.007363	0.000000	
SECOND_OF_PAIR	354076155	354076155	1.000000	0	353291382	0.997784	52241784949	329028241	49020404275	48228342738	0.000000	0.004343	0.003545	0.000273	150.000000	353232683	0.999834	0	0.501103	0.007637	0.000000	
PAIR	708152311	708152311	1.000000	0	707278494	0.998766	104787548457	660865199	98484916481	96984023822	0.000000	0.004212	0.003461	0.000269	150.000000	706465367	0.998850	0	0.500777	0.007500	0.000000