#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02604/HG02604.cram --algo AlignmentStat 1000G/HG02604/QCmetrics/HG02604.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366867239	366867239	1.000000	0	366769694	0.999734	54430222278	344875105	51402517900	50484646460	0.000000	0.004130	0.003509	0.000230	150.000000	365776302	0.997292	0	0.500558	0.006551	0.000000	
SECOND_OF_PAIR	366867239	366867239	1.000000	0	365834114	0.997184	54080426640	341601959	50895597194	49912127883	0.000000	0.004415	0.003695	0.000236	150.000000	365776302	0.999842	0	0.501338	0.006707	0.000000	
PAIR	733734478	733734478	1.000000	0	732603808	0.998459	108510648918	686477064	102298115094	100396774343	0.000000	0.004272	0.003602	0.000233	150.000000	731552604	0.998565	0	0.500947	0.006629	0.000000