#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02610/HG02610.cram --algo AlignmentStat 1000G/HG02610/QCmetrics/HG02610.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352615089	352615089	1.000000	0	352530572	0.999760	52346571288	329204715	49086728108	48377022451	0.000000	0.004086	0.003359	0.000269	150.000000	351705469	0.997659	0	0.500510	0.007663	0.000000	
SECOND_OF_PAIR	352615089	352615089	1.000000	0	351758960	0.997572	51853088163	326280725	48469050757	47430276250	0.000000	0.005349	0.004542	0.000279	150.000000	351705469	0.999848	0	0.501071	0.008520	0.000000	
PAIR	705230178	705230178	1.000000	0	704289532	0.998666	104199659451	655485440	97555778865	95807298701	0.000000	0.004714	0.003947	0.000274	150.000000	703410938	0.998753	0	0.500790	0.008091	0.000000