#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02614/HG02614.cram --algo AlignmentStat 1000G/HG02614/QCmetrics/HG02614.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360922413	360922413	1.000000	0	360801302	0.999664	53540508819	339798183	50637913822	49737335449	0.000000	0.004300	0.003682	0.000254	150.000000	359727453	0.997024	0	0.500541	0.007145	0.000000	
SECOND_OF_PAIR	360922413	360922413	1.000000	0	359792515	0.996869	53163312573	336126253	50076000292	49126595053	0.000000	0.004555	0.003826	0.000261	150.000000	359727453	0.999819	0	0.501580	0.007315	0.000000	
PAIR	721844826	721844826	1.000000	0	720593817	0.998267	106703821392	675924436	100713914114	98863930502	0.000000	0.004427	0.003754	0.000258	150.000000	719454906	0.998419	0	0.501060	0.007230	0.000000