#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02623/HG02623.cram --algo AlignmentStat 1000G/HG02623/QCmetrics/HG02623.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369364486	369364486	1.000000	0	369278541	0.999767	54829922030	345362014	51492308475	50743134237	0.000000	0.004072	0.003349	0.000263	150.000000	368437997	0.997724	0	0.500469	0.007104	0.000000	
SECOND_OF_PAIR	369364486	369364486	1.000000	0	368496449	0.997650	54492335822	342329843	51005993644	50113418119	0.000000	0.004502	0.003681	0.000269	150.000000	368437997	0.999841	0	0.501165	0.007262	0.000000	
PAIR	738728972	738728972	1.000000	0	737774990	0.998709	109322257852	687691857	102498302119	100856552356	0.000000	0.004286	0.003514	0.000266	150.000000	736875994	0.998781	0	0.500817	0.007183	0.000000