#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02628/HG02628.cram --algo AlignmentStat 1000G/HG02628/QCmetrics/HG02628.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368454686	368454686	1.000000	0	368350626	0.999718	54655166313	344089747	51273573262	50381156487	0.000000	0.004466	0.003733	0.000255	150.000000	367442652	0.997535	0	0.500417	0.007243	0.000000	
SECOND_OF_PAIR	368454686	368454686	1.000000	0	367504239	0.997420	54329161280	340988922	50797531982	49890615772	0.000000	0.004612	0.003785	0.000261	150.000000	367442652	0.999832	0	0.501178	0.007435	0.000000	
PAIR	736909372	736909372	1.000000	0	735854865	0.998569	108984327593	685078669	102071105244	100271772259	0.000000	0.004539	0.003759	0.000258	150.000000	734885304	0.998682	0	0.500797	0.007339	0.000000