#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02634/HG02634.cram --algo AlignmentStat 1000G/HG02634/QCmetrics/HG02634.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409908269	409908269	1.000000	0	409771667	0.999667	60891657453	384696789	57371040456	56399535066	0.000000	0.004398	0.003736	0.000258	150.000000	408691386	0.997364	0	0.500515	0.007266	0.000000	
SECOND_OF_PAIR	409908269	409908269	1.000000	0	408754423	0.997185	60480653090	381451716	56811827453	55469729685	0.000000	0.005353	0.004601	0.000262	150.000000	408691386	0.999846	0	0.501094	0.007510	0.000000	
PAIR	819816538	819816538	1.000000	0	818526090	0.998426	121372310543	766148505	114182867909	111869264751	0.000000	0.004874	0.004167	0.000260	150.000000	817382772	0.998603	0	0.500804	0.007388	0.000000