#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02635/HG02635.cram --algo AlignmentStat 1000G/HG02635/QCmetrics/HG02635.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383400456	383400456	1.000000	0	383280958	0.999688	56935433497	361160448	53849073720	52910402755	0.000000	0.004498	0.003903	0.000264	150.000000	382446350	0.997822	0	0.500585	0.007822	0.000000	
SECOND_OF_PAIR	383400456	383400456	1.000000	0	382510417	0.997679	56619328222	358323234	53395581181	52408873798	0.000000	0.004683	0.004012	0.000269	150.000000	382446350	0.999833	0	0.500692	0.008043	0.000000	
PAIR	766800912	766800912	1.000000	0	765791375	0.998683	113554761719	719483682	107244654901	105319276553	0.000000	0.004590	0.003957	0.000266	150.000000	764892700	0.998826	0	0.500638	0.007933	0.000000