#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02643/HG02643.cram --algo AlignmentStat 1000G/HG02643/QCmetrics/HG02643.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362248596	362248596	1.000000	0	362150825	0.999730	53731724731	340922203	50803518757	49919757641	0.000000	0.004492	0.003826	0.000270	150.000000	361215822	0.997418	0	0.500756	0.008520	0.000000	
SECOND_OF_PAIR	362248596	362248596	1.000000	0	361274680	0.997311	53390538296	337511769	50289865235	49425869141	0.000000	0.004552	0.003787	0.000278	150.000000	361215822	0.999837	0	0.501119	0.008689	0.000000	
PAIR	724497192	724497192	1.000000	0	723425505	0.998521	107122263027	678433972	101093383992	99345626782	0.000000	0.004522	0.003807	0.000274	150.000000	722431644	0.998626	0	0.500937	0.008605	0.000000