#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02652/HG02652.cram --algo AlignmentStat 1000G/HG02652/QCmetrics/HG02652.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382168522	382168522	1.000000	0	381984154	0.999518	56745810516	360202318	53699725082	52589955767	0.000000	0.004557	0.003993	0.000223	150.000000	380597763	0.996371	0	0.500518	0.006407	0.000000	
SECOND_OF_PAIR	382168522	382168522	1.000000	0	380673489	0.996088	56241188354	355677588	52980986200	51744461668	0.000000	0.005022	0.004340	0.000232	150.000000	380597763	0.999801	0	0.501601	0.006607	0.000000	
PAIR	764337044	764337044	1.000000	0	762657643	0.997803	112986998870	715879906	106680711282	104334417435	0.000000	0.004789	0.004165	0.000227	150.000000	761195526	0.998083	0	0.501059	0.006507	0.000000