#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02660/HG02660.cram --algo AlignmentStat 1000G/HG02660/QCmetrics/HG02660.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376857022	376857022	1.000000	0	376768902	0.999766	55946350037	353022821	52667956341	51929388479	0.000000	0.003825	0.003067	0.000244	150.000000	375607048	0.996916	0	0.500615	0.006966	0.000000	
SECOND_OF_PAIR	376857022	376857022	1.000000	0	375651575	0.996801	55448659655	349503968	52028337330	50914550873	0.000000	0.004942	0.004080	0.000247	150.000000	375607048	0.999881	0	0.501121	0.007156	0.000000	
PAIR	753714044	753714044	1.000000	0	752420477	0.998284	111395009692	702526789	104696293671	102843939352	0.000000	0.004381	0.003570	0.000245	150.000000	751214096	0.998397	0	0.500867	0.007061	0.000000