#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG02675/HG02675.cram --algo AlignmentStat 1000G/HG02675/QCmetrics/HG02675.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363396894	363396894	1.000000	0	363219661	0.999512	53854238928	340292267	50704436409	49826984597	0.000000	0.004401	0.003662	0.000265	150.000000	362250224	0.997331	0	0.500608	0.007117	0.000000	
SECOND_OF_PAIR	363396894	363396894	1.000000	0	362319072	0.997034	53511650167	337090127	50207956280	49255601758	0.000000	0.004704	0.003865	0.000271	150.000000	362250224	0.999810	0	0.501171	0.007228	0.000000	
PAIR	726793788	726793788	1.000000	0	725538733	0.998273	107365889095	677382394	100912392689	99082586355	0.000000	0.004552	0.003763	0.000268	150.000000	724500448	0.998569	0	0.500889	0.007173	0.000000